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Home List of articles on MiGAP usage and review

List of articles on MiGAP usage and review

 

List of articles that refer to MiGAP

  1. Tamura T, Matsuzawa T, Oji S, Ichikawa N, Hosoyama A, Katsumata H, Yamazoe A, Hamada M, Suzuki K, Gonoi T, Fujita N. A genome sequence-based approach to taxonomy of the genus Nocardia. Antonie Van Leeuwenhoek. 2012 Oct;102(3):481-91.
  2. Watanabe T, Kojima H, Fukui M. Draft Genome Sequence of a Psychrotolerant Sulfur-Oxidizing Bacterium, Sulfuricella denitrificans skB26, and Proteomic Insights into Cold Adaptation. Appl Environ Microbiol. 2012 Sep;78(18):6545-9.
  3. Kawata Y, Kawasaki K, Shigeri Y. Efficient secreted production of (R)-3-hydroxybutyric acid from living Halomonas sp. KM-1 under successive aerobic and microaerobic conditions. Appl Microbiol Biotechnol. 2012 Nov;96(4):913-20.
  4. Goto T, Ogura Y, Hirakawa H, Tomida J, Morita Y, Akaike T, Hayashi T, Kawamura Y. Complete Genome Sequence of Helicobacter cinaedi Strain PAGU611, Isolated in a Case of Human Bacteremia. J Bacteriol. 2012 Jul;194(14):3744-5.
  5. Kawata Y, Kawasaki K, Shigeri Y. Draft genome sequence of Halomonas sp. strain KM-1, a moderately halophilic bacterium that produces the bioplastic poly(3-hydroxybutyrate). J Bacteriol. 2012 May;194(10):2738-9.
  6. Suzuki M, Eda Y, Ohsawa S, Kanesaki Y, Yoshikawa H, Tanaka K, Muramatsu Y, Yoshikawa J, Sato I, Fujii T, Amachi S. Iodide Oxidation by a Novel Multicopper Oxidase from the Alphaproteobacterium Strain Q-1. Appl Environ Microbiol. 2012 Jun;78(11):3941-9.
  7. Morohoshi T, Tominaga Y, Someya N, Ikeda T. Complete genome sequence and characterization of the N-acylhomoserine lactone-degrading gene of the potato leaf-associated Solibacillus silvestris. J Biosci Bioeng. 2012 Jan;113(1):20-5.
  8. Tuama EO, Deck J, Droge G, Doring M, Field D, Kottmann R, Ma J, Mori H, Morrison N, Sterk P, Sugawara H, Wieczorek J, Wu L, Yilmaz P. Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012). Standards in Genomic Science:7:166-170
  9. Yokoyama S, Oshima K, Nomura I, Hattori M, Suzuki T. Complete genomic sequence of the equol-producing bacterium Eggerthella sp. strain YY7918, isolated from adult human intestine. J Bacteriol. 2011 Oct;193(19):5570-1.
  10. Yokoyama S, Oshima K, Nomura I, Hattori M, Suzuki T. Complete Genomic Sequence of the O-Desmethylangolensin-Producing Bacterium Clostridium rRNA Cluster XIVa Strain SY8519, Isolated from Adult Human Intestine. J Bacteriol. 2011 Oct;193(19):5568-9.
  11. Kuwahara T, Ogura Y, Oshima K, Kurokawa K, Ooka T, Hirakawa H, Itoh T, Nakayama-Imaohji H, Ichimura M, Itoh K, Ishifune C, Maekawa Y, Yasutomo K, Hattori M, Hayashi T. The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing. DNA Res. 2011 Aug;18(4):291-303.
  12. Yang Y, Kurokawa T, Takahama Y, Nindita Y, Mochizuki S, Arakawa K, Endo S, Kinashi H. pSLA2-M of Streptomyces rochei Is a Composite Linear Plasmid Characterized by Self-Defense Genes and Homology with pSLA2-L. Biosci Biotechnol Biochem. 2011;75(6):1147-53.
  13. Yee LM, Matsumoto T, Yano K, Matsuoka S, Sadaie Y, Yoshikawa H, Asai K. The genome of Bacillus subtilis phage SP10: a comparative analysis with phage SPO1. Biosci Biotechnol Biochem. 2011;75(5):944-52.
  14. Yee LM, Matsumoto T, Yano K, Matsuoka S, Sadaie Y, Yoshikawa H, Asai K. Naito M, Sato K, Shoji M, Yukitake H, Ogura Y, Hayashi T, Nakayama K. Characterization of the Porphyromonas gingivalis conjugative transposon CTnPg1: determination of the integration site and the genes essential for conjugal transfer. Microbiology. 2011 Jul;157(Pt 7):2022-32.
  15. Urbanczyk H, Ogura Y, Hendry TA, Gould AL, Kiwaki N, Atkinson JT, Hayashi T, Dunlap PV. Genome sequence of Photobacterium mandapamensis strain svers.1.1, the bioluminescent symbiont of the cardinal fish Siphamia versicolor. J Bacteriol. 2011 Jun;193(12):3144-5.
  16. Kobayashi H, Kawasaki K, Takeishi K, Noda H. Symbiont of the stink bug Plautia stali synthesizes rough-type lipopolysaccharide. Microbiol Res. 2011 Dec 20;167(1):48-54.
  17. Morohoshi T, Wang WZ, Someya N, Ikeda T. Genome sequence of Microbacterium testaceum StLB037, an N-acylhomoserine lactone-degrading bacterium isolated from potato leaves. J Bacteriol. 2011 Apr;193(8):2072-3.
  18. Suzuki T, Yasui K. Plasmid artificial modification: a novel method for efficient DNA transfer into bacteria. Methods Mol Biol. 2011;765:309-26.
  19. Siezen RJ, van Hijum SA. Genome (re-) annotation and opensource annotation pipelines. Microb Biotechnol. 2010 Jul;3(4):362-9.

 

The article presented by the MiGAP team

Sugawara H, Ohyama A, Mori H and Kurokawa K.

Microbial Genome Annotation Pipeline (MiGAP) for diverse users.

20th Int. Conf. Genome Informatics (Kanagawa, Japan)  2009: S-001,

p 1-2.